'''
Created on Nov 15, 2010

@author: oabalbin
'''
from optparse import OptionParser
from snps.snp_calling import main

if __name__ == '__main__':
    
    optionparser = OptionParser("usage: %prog [options] ")
    optionparser.add_option("-r", "--configrun", dest="configrun",
                            help="file with run configuration")
    optionparser.add_option("-e", "--configexp", dest="configexp",
                            help="file with experiment configuration")
    (options, args) = optionparser.parse_args()
    
    snpcall_method = 'samtools'
    proc_status = main(options.configrun, options.configexp, snpcall_method)
    
        
